单链DNA表面增强拉曼散射检测条件的优化

蒋承顺, 李旺, 柳艳, 陆峰

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光散射学报 ›› 2020, Vol. 32 ›› Issue (4) : 306-311. DOI: 10.13883/j.issn1004-5929.202004003
表面增强拉曼散射技术

单链DNA表面增强拉曼散射检测条件的优化

  • 蒋承顺1, 李旺2, 柳艳2, 陆峰1,2*
作者信息 +

Optimization of surface enhanced Raman scattering detection conditionsfor single-stranded DNA

  • JIANG Chengshun1, LI Wang2, LIU Yan2, LU Feng1,2*
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摘要

目的:研究不同检测条件对单链脱氧核糖核酸(Single-Stranded Deoxyribonucleic Acid,ssDNA)表面增强拉曼散射(Surface-Enhanced Raman Spectroscopy,SERS)检测结果的影响,以确定最佳的检测条件。方法:以单链DNA GO18(序列为AACCTTTGGTCGGGCAAGGTAGGTT (5′~3′))为例,探讨不同检测条件(银胶溶液浓缩倍数、激发功率及积分时间、装样方式、凝聚剂MgSO4用量等)对 SERS 检测结果的影响规律。在最佳检测条件下,对稳定性、重复性和检测限进行考察并对光谱图进行峰位归属。结果:确定适于单链DNA检测的最佳条件是:银胶溶液浓缩100倍,激发功率30%(60 mW),积分时间30 s,装样方式为1.0~0.8高纯度石英毛细管,MgSO4(10mM)的用量2.0 μL。该条件下测定结果的稳定性高,重复性好,检测限为0.625μm。结论:本研究优化了单链DNA的SERS检测条件,为进一步扩大和推动 SERS 技术在单链DNA检测中的应用提供方法基础。

Abstract

Objective:Studying the optimal detection conditions of surface-enhanced Raman Spectroscopy (SERS) for single-stranded deoxyribonucleic Acid (ssDNA).Method:ssDNA GO18(AACCTTTGGTCGGGCAAGGTAGGTT(5′~3′))is used as an example to explore the influence of different detection conditions (concentration of silver sol, laser power and integration time, sample loading method, dosage of coagulant MgSO4) on the results of SERS detection. Under the optimal detection conditions, the stability, repeatability, and detection limit were investigated, and the peak positions of the spectra were assigned.Result:The best conditions for determining ssDNA were as follows: silver sol was concentrated 100 times, laser power was 30% (60 mW), integration time was 30 s, the sample was loaded in 1.0-0.8 high-purity quartz capillary and the amount of MgSO4 (10mM) was 2.0μL. The measurement results under these conditions have high stability and good repeatability, and the detection limit is 0.625μM.Conclusion:This study optimized SERS detection conditions for ssDNA and provided a method basis for further expanding and promoting the application of SERS technology in the field.

关键词

单链DNA / 表面增强拉曼散射 / 检测条件 / 峰位归属

Key words

ssDNA / SERS / Testing conditions / Peak assignment

引用本文

导出引用
蒋承顺, 李旺, 柳艳, 陆峰. 单链DNA表面增强拉曼散射检测条件的优化. 光散射学报. 2020, 32(4): 306-311 https://doi.org/10.13883/j.issn1004-5929.202004003
JIANG Chengshun, LI Wang, LIU Yan, LU Feng. Optimization of surface enhanced Raman scattering detection conditionsfor single-stranded DNA. Chinese Journal of Light Scattering. 2020, 32(4): 306-311 https://doi.org/10.13883/j.issn1004-5929.202004003

参考文献

[1]Schadt EE, Turner S, Kasarskis A. A window into third-generation sequencing[J]. Human Molecular Genetics,2010,19(R2):R227-R240.
[2]Ketomaki K, Lonnberg H. Quantification of Mixed-Phase Hybridization on Polymer Microparticles by Europium (III) Ion Fluorescence[J]. Methods in Molecular Biology,2007,381:385-400.
[3]Faulds K, Smith WE, Graham D.Evaluation of surface-enhanced resonance Raman scattering for quantitative DNA analysis[J]. Analytical chemistry,2004,76(2):412-417.
[4]Jeanmaire DL, Van Duyne RP.Surface Raman Spectroelectrochemistry: Part I. Heterocyclic, Aromatic, and Aliphatic Amines Adsorbed on the Anodized Silver Electrode[J]. Electroanalytical Chemistry and Interfacial Electrochemistry,1977,84:1-20.
[5]Albrecht MG,Creighton JA. Anomalously Intense Raman Spectra of Pyridine at a Silver Electrode[J]. American Chemical Society,1977,99:5215-5217.
[6]Papadopoulou E, Bell SE.Label-Free Detection of Single-Base Mismatches in DNA by Surface-Enhanced Raman Spectroscopy[J]. Angewandte Chemie,2011,50(39):9058-9061.
[7]Papadopoulou E, Bell SE. Label‐Free Detection of Nanomolar Unmodified Single‐ and Double‐Stranded DNA by Using Surface‐Enhanced Raman Spectroscopy on Ag and Au Colloids[J]. Chemistry,2012,18(17):5394-5400.
[8]Xu LJ, Lei ZC, Li J, et al.Label-Free Surface-Enhanced Raman Spectroscopy Detection of DNA with Single-Base Sensitivity[J]. American Chemical Society,2015,137(15):5149-5154.
[9]Lee PC, Meisel D.Adsorption and Surface-Enhanced Raman of Dyes on Silver and God Sols[J]. Physical Chemistry, 1982, 86(17):3391-3395.
[10]Friedman SJ, Terentis AC.Analysis of G-quadruplex conformations using Raman and polarized Raman spectroscopy[J]. Raman Spectroscopy, 2016, 47(3):259-268.
[11]Li Y, Han X, Zhou S, et al.Structural Features of DNA G-Quadruplexes Revealed by Surface-Enhanced Raman Spectroscopy[J]. Physical Chemistry Letters,2018,9(12):3245-3252.
[12]Palacky J, Vorlickova M, Kejnovska L, et al.Polymorphism of human telomeric quadruplex structure controlled by DNA concentration: a Raman study[J]. Nucleic Acids Research,2012,41(2):1005-1016.
[13]Abbott A. Four-strand DNA structure found in cells[J]. Nature News,2013.

基金

国家科技重大专项(2018ZX09J18112)和生物安全研究专项(19SWAQ20)资助
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